Mod:Hunt Research Group/from chemdraw

From wiki
Jump to navigation Jump to search

Starting from Chemdraw

  • in chemdraw first clean up the structure in chemdraw, Structure:Clean up structure
  • in chemdraw export as a MDLmol file file.mol
  • in gaussview choose open file
set file type to MDO MOL Files
set open-as to gaussian input file
open options button and select Add Hydrogens: Ask
  • then click open, it will look funny, don't panic
  • first thing to do is Edit:clean
  • then manipulate the atoms to reasonable possitions
  • clean again
  • keep repeating this process until you have a good structure
  • run a HF/3-21G optimisation to obtain a starting structure