Hartwyat
Contents
Comments
It's great that you have a working wiki however, your answers could have been elaborated more thoroughly. Also, it would have been nice if you had focused a bit more on enhancing the visual appeal of the wiki. If you have any query, please contact Prof. Hunt.
NH3 Molecule
Log file name: NH3_optimisation_1.0_WOH
Media: NH3_OPTIMISATION_1.0_WOH.LOG
Calculation Data
| Molecule | NH3 |
| Calculation Method | RB3LYP |
| Basis Set | 6-31G(d,p) |
| Final Energy in Atomic Units | -56.557769 |
| RMS Gradient | 0.0000001 |
| Point group | C3V |
| Bond Length | 1.02Â |
| Bond Angle | 106° |
Item Table
Item Value Threshold Converged? Maximum Force 0.000000 0.000015 YES RMS Force 0.000000 0.000010 YES Maximum Displacement 0.000003 0.000060 YES RMS Displacement 0.000001 0.000040 YES
Optimized molecule image
3D Image |
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IR Data
| Mode | Wavenumber(cm-1) | Symmetry | Intensity |
| 1 | 1089 | A1 | 145 |
| 2 | 1694 | E | 14 |
| 3 | 1694 | E | 14 |
| 4 | 3461 | A1 | 1 |
| 5 | 3590 | E | 0 |
| 6 | 3590 | E | 0 |
Full mass-weighted force constant matrix: Low frequencies --- -5.6864 -3.6131 -3.6124 0.0012 0.0045 0.0163 Low frequencies --- 1089.3674 1693.9284 1693.9284
IR Spectra
Charge Distribution
| Atom | Charge |
| Nitrogen | -1.13 |
| Hydrogen (x3) | 0.38 |
Photo of Charges
Project Molecule
N2F2 log file:
Media:N2F2_OPTIMSATION_WOH.LOG
Calculation Data
| Molecule | N2F2 |
| Calculation Method | RB3LYP |
| Basis Set | 6-31G(d,p) |
| Final Energy in Atomic Units | -309.012410 |
| RMS Gradient | 0.0000003 |
| Point group | C2V |
| Bond Length between N=N | 1.22Â |
| Bond Length between N-F | 1.39Â |
| Bond Angle F-N=N | 114° |
Item Table
Item Value Threshold Converged? Maximum Force 0.000001 0.000015 YES RMS Force 0.000000 0.000010 YES Maximum Displacement 0.000001 0.000060 YES RMS Displacement 0.000001 0.000040 YES
The value is lower than the threshold showing that the optimization has completed correctly and has converged
Optimized molecule image
3D Image |
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IR Data
| Mode | wavenumber(cm-1 | Symmetry | Intensity |
| 1 | 348 | A1 | 1 |
| 2 | 561 | A2 | 0 |
| 3 | 772 | B2 | 75 |
| 4 | 949 | A1 | 75 |
| 5 | 987 | B2 | 81 |
| 6 | 1637 | A1 | 21 |
Full mass-weighted force constant matrix: Low frequencies --- -0.0016 -0.0009 0.0012 3.2225 4.3532 5.1001 Low frequencies --- 347.8772 561.2472 771.6105
The frequencies are between -20 and 20 showing again that the optimization is complete
IR Spetra
IR Analysis
There are 3N-6 vibrations expected where N is the number of atoms, in this case 4. This means the molecule is expected to have 3(4)-6 vibrations which equals 6, the amount of vibrations seen
There are only four vibrations seen on the spectra as two of the vibrations have low intensity and don’t absorb the infrared energy as well
There is an asymmetric N-F stretch at 771cm-1 which is mode 3
The highest energy vibration is the mode 6 A1 symmetric vibration where the N molecules move towards/away from each other and the F molecules stay stationary
Charge Distribution
| Atom | Charge |
| Nitrogen (x2) | 0.22 |
| Fluoride (x2) | -0.22 |
Photo of Charges
Molecular Orbital Analysis
Mode 1-4 are the core orbitals, with mode 1 and 3 being the s orbitals of F and N with both orbitals being the same charge. Where mode 2 and 4 are the s orbitals that have different charges to each other